QUERY : APVKSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTTLA : QUERY
Q9XWS4 : -PQKNAENINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVTDAGDSDIILSV- : Q9XWS4
RL30_MAIZE : --KKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKSKLVIIANNCPPLRKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKT-- : RL30_MAIZE
Q9SH07 : --KKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIVDPGDSDIIKSI- : Q9SH07
Q9VJ19 : --KKALESTNARLALVMKSGKYCLGYKQTLKTLRQGKAKLVLIASNTPALRKSEIEYYAMLAKTEVQHYSGTNIELGTACGKYFRVCTLSITDPGDSDIIRSL- : Q9VJ19
Q9UTP0 : --KKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRKSELEYYAMLSRCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL---- : Q9UTP0
RL30_TRYBB : ------DTINTKIQLVMKSGKYVLGTQQSLKTLRQGRSKLVVISANCPPIRKAEIEYYCTLSKTPIHHYSGNNLDLGTACGRHFRACVLSITDVGDSDI----- : RL30_TRYBB
RL3E_METTH : --------IDRGIRVAVDTGNVILGSKRTIQSLKLGKGKLVVMASNIPEDLKEDIEYYAKLSEIPVYTHEGTSVELGSVCGKPFTVGALLIQDPGDSTILEMV- : RL3E_METTH
RL3E_METVA : --------INRAIRVAVDTGNVVLGTKQAIKNIKHGEGKLVIIAGNCAKDVKEDIFYYTKLSETPVYTHQVTSIELGAICGKPFPVSALLVLEPGNSAIL---- : RL3E_METVA
RL3E_THECE : -----------ELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTVSALAVVDPGESRIL---- : RL3E_THECE
RL3E_PYRHO : -----------ELKKALETGKVILGSNETIRLAKTGGAKLIIVARNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESRIL---- : RL3E_PYRHO
RL3E_METJA : --------VNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAALLVLDEGLSNIM---- : RL3E_METJA
RL3E_AERPE : -------SVEKALKDLVKTGVYAMGFKQSLKAVKAGEAKAIVIAENTPPELRRKLEYYAKLAGIPIIVYRGTRMDMGLVMGRRHGVSVLAVIDEGSSRIL---- : RL3E_AERPE
Q9XG43 : ------------------TGKFSYGYKATLKNLRSGKCKMIIITDNCIPLRKLELEYYAMLNKCHVHHFYGNNVDLGLSCGKSYGCSCLGITESGE-------- : Q9XG43
RL3E_SULAC : ------QSFEGELKTLLRSGKVIGTRKTLKLLKTGKVKGVVVSSTLRRQDLKDDIMTFSKFSDIPIYLYKGSGYELGTLCGKPFMVSVIGIVDEGESKIL---- : RL3E_SULAC
RL3E_ARCFU : -------EVETIIKTVLKTGGYRLGSKSTLKSLRNGEAKAVIVASNCPEEVLEKIKSY----DVKILVYNGTNMELGALCGKPFSVAAMAITEE---------- : RL3E_ARCFU
RS6X_SULSO : -PQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVPEEIVAHLPLLCDEKKIP-YVYVSSKKALGEACGLQVATASAAILEPGEAKDL---- : RS6X_SULSO
RS6X_METJA : ---KVPEEIQKELLDAVKAQKIKKGANEVTKAVERGIAKLVIIAEDVPEEVVAHLPYLCEEKGIP-YAYVASKQDLGKAAGLEVAASSVAIINEGDAEELKVL- : RS6X_METJA
RS6X_ARCFU : -PEDMQNEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVPPEIVAHLPLLCEEKNVP-YIYVKSKNDLGRAVGIEVPCASAAIINEGE-------- : RS6X_ARCFU
RS6X_METTH : ----------------RETGKVSKGTNEVTKAVERGVAQLVLIAEDVPAEIVAHLPLLAEEKEIP-YIYIPTKDELGAAAGLNVGTASSAIVEAGDAE------ : RS6X_METTH
RS6X_AERPE : -PEDLAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVPPEIVMHLPLLCDEKKIP-YVYVPSKKRLEAAGIEVAAASVAIIEPPGDAETL---- : RS6X_AERPE
BAA91198 : ASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTPIEVYCHLPVMCEDRNLP-YVYIPSKTDLGAAAGSKRPTCVIMV------------- : BAA91198
CAB76272 : ------------------------GVKEVVKAVRKGEKGLVILAGDIPMDVISHIPVLCEDNNVP-YLYTVSKELLGEASNTKRPTSCVMIVPGG--------- : CAB76272
O74690 : ---------QQILDLVQQASHYKKGANEATKTLNRGISEFIVMAADTIEILLHLPLLCCEDKNVP-YVFVPSKAALGRACGVSRPVISASITTNEASDLL---- : O74690
NHPX_YEAST : --------------------QLKKGANEATKTLNRGISEFIIMAADEPIEILLHLPLLCEEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKTQI- : NHPX_YEAST
Q9VL98 : -PVKT-EEVNPKLADAQLTAKIRKGANEATKTLNRGLADIVVLAGDAIEILLHLPLLCCEDKNVP-YVFVRSKQALGRACGVSRPVACSVTTNEG--------- : Q9VL98
AAF06959 : ------------LDLVQQSCNYKKGANEATKTLNRGISEFIVMAADALEIILHLPLLCCEDKNVP-YVFVRSKQALGRACGRPVIACSVTIKE----------- : AAF06959
Q9XXD4 : ------------------------GIKDVQKELRRNEKGICILAGNVSPDVYSHIPGICEEKEIP-YVYIPSREQLGLAVGHRRPSILIFVKPSGDFKEL---- : Q9XXD4
NHPX_CAEEL : ------------VQQAMNYKQLKKGANEATKTLNRGISEIIVMAADALEILLHLPLLCCEDKNVP-YVFVRSKAALGRACGVTRPVIAASITNEG--------- : NHPX_CAEEL
Q9U3Z7 : -----------------------KGANEATKTLNRGLADIVVLAGDAIEILLHLPLLCCEDKNVP-YVFVRSKQALGRACGVSRPVACSVTTNEG--------- : Q9U3Z7
YLXQ_BACSU : ------------LGLANRARKVVSGEDLVIKEIRNARAKLVLLTENTAKKVTDKCNYY----KVP-YKKVESRAVLGRSIGKEARV-VVAVTDQGFANKLISL- : YLXQ_BACSU
Q9SUY1 : --------------------QLKKGANEATKTLNRGISEFVVMAADEPLEILLHLPLLAEDDKNVPYVFVPSKQALGRACGRPVIACSV--------------- : Q9SUY1
RL8_SCHPO : --------------------NVKYGLNHVVALIEAKKAKLVLIASDVDPELVVFLPALCKKMGVP-YAIVKNKARLGTVIHQK-TAAVLAVTEVREED------ : RL8_SCHPO
RL7A_ANOGA : -----------------RANQLRQGINSVVKMVEQKKAQLVIIAHDVDPELVVYLPALCRKMGVPYCIIKG-KARLGTLVYRK-TCTCVALT------------ : RL7A_ANOGA
O97249 : ----------TAIQKVIKNAHVKIGIREVIKSIESQEAKVCFLSDVCSPAYKKLITTLCAEKNIPLFMVQNDSKDLGHWAGKIIGASSVAVVDFGE-------- : O97249
Q9WZN2 : ---------------AVRARKIVFGKERIRAYIRSREKKLIIIAEDTSERMKRDTIMRCENKKVP-YVIMFSKEELGRLLDKP-AVSVIGLEE----------- : Q9WZN2
AAF60465 : ---------------------VRHGVNTITRLVETRRAQLVLIAHDVPLEIVLHLPALCRKYNVP-YAIIKGKASLGTVV-RRKTTAAVALVD----------- : AAF60465
RL8A_YEAST : ---------------------VKYGLNHVVALIENKKAKLVLIANDVDPELVVFLPALCKKMGVP-YAIVKGKARLGTLVNKTSAVAALTEVRAEDEAALAKL- : RL8A_YEAST
Y256_HUMAN : ----------------------VMGLREVTKHMKLNKIKCVIISPNCEKIQLDEALYMAREQEIP-FVFALGRKALGRCVNKLVPVSVVGIFN----------- : Y256_HUMAN
RL7A_DROME : ---------------------VSAGTNTVTKLIEQKKAQLVVIAHDVDPELVLFLPALCRKMGVP-YCIVKGKARLGRLV-RRKTCTTLALT------------ : RL7A_DROME
YLXQ_ENTFC : --------------LAMRAGKLITGEELTIADIRNEKAKIVFVANDASENTKKKVKDKSSYYEVPCFELF-SEAEITQMIGKPRKV--FGIVDNGFAKKTKEL- : YLXQ_ENTFC
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101- :
OrigSeq : APVKSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTTLA : OrigSeq
jalign : -----------HHHHH-----------EEH---------EEEEE---------------------EEE-----------------EEEEEE------------- : jalign
jfreq : -----HHHHHHHHHHHHH---EEE--HEEEEHHH----EEEEEE----HHHHHHHHHHHH-----EEEEE--------------EEEEEEE-----HHHHHH-- : jfreq
jhmm : -----HHHHHH---------EEE---EEEEEE----------EEEEEEEEEEE------------EEE-------E------------EEEEEE---------- : jhmm
jnet : -----HHHHHHHHHHHHH---EEE--HHHHHHHH----EEEEEE----HHHHHHHHHHHH-----EEEEE---HHHHHH------EEEEEEE-----HHHHH-- : jnet
jpssm : -----HHHHHHHHHHHHHH--EEE--HHHHHHHH----EEEEE----HHHHH-HHHHHHHH----EEEEE---HHHHHHH-----EEEEEEE------E----- : jpssm
jpred : -----HHHHHHHHHHHHH---EEE--HEEHHHHH----EEEEEE----HHHHHHHHHHHH-----EEEEE---------------EEEEEEE------------ : jpred
Lupas 14 : -------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21 : -------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28 : -------------------------------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : --------BB--B--B---B-BBBBBBBBB-BB--B-BBBBBBB--BB-BB---B-BBB-B--BBBBBBB-B-BBBB-BBB--BBBBBBBBBBBBBBBBBBBBB : Jnet_25
Jnet_5 : --------B---B---------------B---B-------BB-----------------------BB-----------B--------BBBBB------------ : Jnet_5
Jnet_0 : -------------------------------------------------------------------------------------------------------- : Jnet_0
Jnet Rel : 87478689999999888718467510444566642897178865477345563367887527982799735923343332886152789884379731211127 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
jalign - Jnet alignment prediction
jfreq - Jnet PSIBLAST frequency profile prediction
jhmm - Jnet hmm profile prediction
jnet - Jnet prediction
jpssm - Jnet PSIBLAST pssm profile prediction
jpred - Consensus prediction over all methods
MCoil - MultiCoil prediction (and dimer and trimer predictions)
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet prediction of prediction accuracy, ranges from 0 to 9, bigger is better.