YourSeq      : APVKSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTTLA : YourSeq  
RL30_MAIZE   : KTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKSKLVIIANNCPPLRKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKTTP : RL30_MAIZE  
AAF53738     : KQKKALESTNARLALVMKSGKYCLGYKQTLKTLRQGKAKLVLIASNTPALRKSEIEYYAMLAKTEVQHYSGTNIELGTACGKYFRVCTLSITDPGDSDIIRSL. : AAF53738  
RL30_TRYBB   : KVKSKVDTINTKIQLVMKSGKYVLGTQQSLKTLRQGRSKLVVISANCPPIRKAEIEYYCTLSKTPIHHYSGNNLDLGTACGRHFRACVLSITDVGDSDITSA.. : RL30_TRYBB  
RL30_SCHPO   : KSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELEYYAMLSKANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSDILDA.. : RL30_SCHPO  
RL30_KLULA   : APAKNQENINQKLALVVKSGKYSLGYKSTVKSLRQGKAKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVTILDAGDSDILTALA : RL30_KLULA  
RL3E_PYRHO   : ......MDLAFELKKALETGKVILGSNETIRLAKTGGAKLIIVARNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESRILALVK : RL3E_PYRHO  
Y256_HUMAN   : ELVSFQERIYQDPVRAKARRRLVMGLREVTKHMKLNKIKCVIISPNCKIQSKGGLDEALYREQEIPFVFALGRKALGRCVNKLVPVSVVGIFYFGAEELTEEAR : Y256_HUMAN  
RS6X_PYRHO   : VPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVPEEIVAHLPPLCE.EKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKAEIAMKVR : RS6X_PYRHO  
NHP2_YEAST   : ASKKLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDIPADVISHIPVLCE.DHSVPYIFIPSKQDLGAAGATKRPTSVVFIVKDGKNSFNEVVK : NHP2_YEAST  
RS6X_METTH   : VPKELADKAAEALEIARETGKVSKGTNEVTKAVERGVAQLVLIAEDVPAEIVAHLPLLAE.EKEIPYIYIPTKDELGAAAGLNVGTASSAIVEAGDAEIIEKVE : RS6X_METTH  
RS6X_SULSO   : VPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVPEEIVAHLPLLCD.EKKIPYVYVSSKKALGEACGLQVATASAAILEPGEAEIIKRVN : RS6X_SULSO  
RS6X_AERPE   : VPEDLAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVPPEIVMHLPLLCD.EKKIPYVYVPSKKRLGEAAGIEVAAASVAIIEPGDAEIVEKVK : RS6X_AERPE  
RS6X_ARCFU   : VPEDMQNEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVPPEIVAHLPLLCE.EKNVPYIYVKSKNDLGRAVGIEVPCASAAIINEGELSLVEKIK : RS6X_ARCFU  
RS6X_METJA   : VPEEIQKE...LLDAVAKAQKIKKGANEVTKAVERGIAKLVIIAEDVPEEVVAHLPYLCE.EKGIPYAYVASKQDLGKAAGLEVAASSVAIINEGDAVLIEKVN : RS6X_METJA  
Q9XWS4       : KPQKNAENINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVTDAGDSDIILSVP : Q9XWS4  
Q9XG43       : KNKSTSELLSSKLKIIIKTGKFSYGYKATLKNLRSGKCKMIIITDNCIPLRKLELEYYAMLNKCHVHHFYGNNVDLGLSCGKSYGCSCLGITESGEVNFNELL. : Q9XG43  
RL3E_ARCFU   : .....MTEVETIIKTVLKTGGYRLGSKSTLKSLRNGEAKAVIVASNCPEEVLEKIKSY....DVKILVYNGTNMELGALCGKPFSVAAMAITEEI......... : RL3E_ARCFU  
RL3E_THECE   : .....MVDFAFELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTVSALAVVDPGESRILALGG : RL3E_THECE  
RL3E_METVA   : MRRRYSMDINRAIRVAVDTGNVVLGTKQAIKNIKHGEGKLVIIAGNCAKDVKEDIFYYTKLSETPVYTHQVTSIELGAICGKPFPVSALLVLEPGNSAILNINN : RL3E_METVA  
RL3E_METTH   : ......MDIDRGIRVAVDTGNVILGSKRTIQSLKLGKGKLVVMASNIPEDLKEDIEYYAKLSEIPVYTHEGTSVELGSVCGKPFTVGALLIQDPGDSTILEMVG : RL3E_METTH  
RL3E_METJA   : MRRRENMDVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAALLVLDEGLSNIMELVE : RL3E_METJA  
RL3E_AERPE   : ....MSVSVEKALKDLVKTGVYAMGFKQSLKAVKAGEAKAIVIAENTPPELRRKLEYYAKLAGIPIIVYRGTRMDMGLVMGRRHGVSVLAVIDEGSSRILEQAE : RL3E_AERPE  
RL3E_SULAC   : ....MSQSFEGELKTLLRSGKVILGTRKTLKLLKTGKVKGVVVSSTLRQDLKDDIMTFSKFSDIPIYLYKGSGYELGTLCGKPFMVSVIGIVDEGESKILEFIK : RL3E_SULAC  

             : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101- :
OrigSeq      : APVKSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTTLA : OrigSeq

jalign       : -----HHHHHHHHHHHHH---EEE--HHHHHHHHH---EEEEEE-------HHHHHHHHH-----EEEE----------------EEEEEEEE-----EE---- : jalign
jfreq        : -----HHHHHHHHHHHHH---EEE--HHHHHHHHH---EEEEEE-------HHHHHHHHH-----EEEEE---H--HHE-----EEEEEEEE-----HHHHH-- : jfreq
jhmm         : ----HHHHHHHHHHHHHH---EEEEHHHHHHHHHH---EEEEE----HHHHHHHHHHHHHH---EEEEEE---HHHHHHH-----EEEEEEE---HHHHHHH-- : jhmm
jnet         : -----HHHHHHHHHHHHH---EEE-HHHHHHHHHH---EEEEEE---HHHHHHHHHHHHHH----EEEEE--HHHHHHH------EEEEEEE---HHHHHHH-- : jnet
jpssm        : -----HHHHHHHHHHHHH---EEE-HHHHHHHHH----EEEEE----HHHHHHHHHHHHH-----EEEEE--HHHHHHHH---E--EEEEEE----HHHHH--- : jpssm

Jpred        : -----HHHHHHHHHHHHH---EEE-HHHHHHHHHH---EEEEEE---HHHHHHHHHHHHH-----EEEEE---HHHHHH------EEEEEEE----HHHHHH-- : Jpred

MCoil        :  : MCoil
MCoilDI      :  : MCoilDI
MCoilTRI     :  : MCoilTRI
Lupas 21     : -------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 14     : -------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 28     : -------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25      : ----B---B---B--BB----BBBBB--BB-BB----B-BBBBB--B---B---B--BB-B--B-BBBB--B--BBBBBBB--B-BBBBBBB--B---BB-BB- : Jnet_25
Jnet_5       : --------B---B--B-----B------BB--B------BBBBB----------B--BB------BB--------BB-BBB----BBBBBBB------BB---- : Jnet_5
Jnet_0       : ---------------------------------------BBBB--------------------------------BB---------BB-B-------------- : Jnet_0
Jnet Rel     : 99894568999999988539628734799999874995799975898376787767765327980999956917778753885425899885288268899828 : Jnet Rel

Your pred    :: Your pred


  


Notes


Key:
consv      - Conservation number (+) = 0; (-) = 10
phd        - PHD prediction
dsc        - DSC prediction
pred       - PREDATOR prediction 
nnssp      - NNSSP prediciton 
zpred      - Zpred prediction 
mul        - Mulpred prediction
jnet       - Jnet prediction
jalign     - Jnet alignment prediction
jhmm       - Jnet hmm profile prediction
jpssm      - Jnet PSIBLAST pssm profile prediction
jfreq      - Jnet PSIBLAST frequency profile prediction
Jpred      -  Consensus prediction over all methods

PHDacc     - Solvent Accessibility

PHD Rel    - PHD Reliability
PRED Rel   - Predator Reliability
NNSSP Rel  - NNSSP Reliability
PHDHtm     - PHD transmembrane prediction
MCoil      - MultiCoil prediction (+ Dimer and trimer predictions)
Lupas      - Lupas Coil prediction (21,14,and 28 window sizes)

Note on coiled coil predictions  - = < 50% probability
				 c = >50% <90% probability
				 C = >90% probability