ATP

Adenosine triphosphate (ATP) is the primary energy source involved in most of the metabolism. An ATP molecule consists of three parts: a nitrogenous base called adenine, a ribose sugar and three phosphate groups. With the presence of three negatively-charged phosphate groups in ATP, the molecule is highly negative. The pentose sugar in ATP is a ribose, so hydroxyl groups are present at the 2ā€™ and 3ā€™ carbons. N-9 of adenine is linked to 1ā€™ end of ribose through N-glycosidic bond while š›¼-phosphate group is linked to 5ā€™ carbon. Two additional phosphate groups are connected to š›¼-phosphate group. Chemical energy is stored in the high energy phosphoanhyride bond between phosphate groups, therefore hydrolysis of ATP into ADP and inorganic phosphate is a highly exogonic reaction. Terminal Ī³-phosphate is released in hydrolysis. The formation of ATP occurs in anabolic reactions (e.g. photosynthesis) whereas hydrolysis of ATP to release enengy is involved in catabolic reactions (e.g. glycolysis, citric acid cycle and Ī²-oxidation of fatty acids)

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CTP

Cytidine triphosphate (CTP) is an example of pyrimidine nucleoside triphosphate. An CTP molecule includes three main components: a nitrogenous base called cytosine, a ribose sugar and three phosphate groups. Similar to other nucleoside triphosphates, the presence of three phosphate groups makes CTP highly negative. N-1 of cytosine is linked to 1ā€™ end of ribose through N-glycosidic bond while š›¼-phosphate group is linked to 5ā€™ carbon. Ī²-phosphate group is attached to š›¼-phosphate group and followed by terminal Ī³-phosphate. Phosphoanhyride bond between phosphate groups stores large amount of chemical energy. CTP inhibits aspartate carbamoyltransferase, which is involved in de novo pyrimidine synthesis pathway.

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GTP

Guanosine triphosphate (GTP) is a purine nucleoside triphosphate. A guanine molecule, a ribose sugar and three phosphate groups are the constituents of GTP. N-glycosidic bond connects N-9 of guanine and 1ā€™ end of ribose whereas š›¼-phosphate group is linked to 5ā€™ carbon. Similar to ATP, GTP is also involved in various biochemical reactions. GTP is used as an energy source. In citric acid cycle, GTP is produced when succinyl-CoA synthetase converts succinyl-CoA to succinate. Elongation stage of translation also needs the use of GTP. One GTP is used to aid the binding of amino-tRNA onto A site of ribosome. Hydrolysis of another GTP release energy that helps move the ribosome along mRNA. GTP is also involved in signal transduction. The Gš›¼ subunit of G protein is activated when it is bound with GTP and it is deactivated when GTP is hydrolysed into GDP and Pi by GTPase.

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dTTP

Deoxyyhymidine triphosphate (dTTP) is a pyrimidine nucleoside triphosphate. dTTP is made up of a thymine molecule, a pentose sugar and three phosphate groups. The sugar in dTTP is deoxyribose, meaning there is only a hydrogen atom attached to 2ā€™ carbon rather than a hydroxyl group. The presence of phosphate groups makes TTP to be highly negative. The N-1 of thymine and 1ā€™ carbon of ribose are linked by N-glycosidic bond whereas the š›¼-phosphate group connects the 5ā€™ carbon of ribose. Ī²-phosphate group is attached to š›¼-phosphate group and followed by terminal Ī³-phosphate. In TA cloning, the opened plasmid has one protruding dTTP at each 3ā€™ ends while the insert has dATP overhang on both sides. This allows the plasmid and insert to be ligated together by DNA ligase.

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UTP

Uridine triphosphate (UTP) is a pyrimidine nucleoside triphosphate. UTP consists of a nitrogenous base called uridine, a ribose sugar and three phosphate groups. The 1ā€™ and 5ā€™ carbons of ribose are bonded to N-1 of uracil and š›¼-phosphate group respectively. N-glycosidic bond is present to link uridine and ribose. UTP is crucial in some metabolic reactions in which it acts as energy source and substrate activator. Its functions are similar to ATP but more specific. In glycogen biosynthesis, glucose-1-phosphate and UTP are converted to UDP-glucose and PPi group by UDP-glucose pyrophosphorylase. Glucose activated by UDP will join the non-reducing end of the growing glycogen chain through Ī±-1āŸ¶4 linkage.

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