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BLAST - NCBI
MPsrch - EBI
MSDtarget - search for sequences in PDB and in Structural
Genomics Projects
TargetDB
SeqAlert
FoldIndex
PipeAlign
Protein structure
Pfam
Protein
Data Bank
PISCES (searching
for nr sequences from PDB)
3D Structure Prediction
Robetta -
homology modelling + ab initio prediction
BioInfo -
mega-server for Threading
SWISS MODEL
Seconardy structure prediction
PHD Server
PSIPred
Server
Major Bioinformatics Sites
European Molecular Biology
Laboratory
NCBI HomePage
ExPASy
Molecular Biology Server
Sanger Center
European Bioinformatics Institute
(EBI)
Structural
Proteomics in Europe (EPINE)
Genome Analysis
GenoList
(Comprehensive annotations of selected genomes)
Micado
(MICrobial Advanced Database Organization)
COG (NCBI Clusters of Orthologous Groups)
SubtiList
(Genome analysis of Bacillus subtilis)
E. coli Genome Project
E.
coli index
Essential E. coli genes
Database of Essentail Genes
SGD (yeast genome database)
WormBase
FlyBase
Protein-Protein Interaction
DIP (Database of Interacting proteins)
BIND (Biomolecular Interaction Network Database)
STRING
(Search Tool for the Retrieval of Interacting Genes/Proteins)
GRID (General Repository of Interaction
Dataset)
Doodle
(Database of oligomerization domains from lambda
experiments)
Hybrigenics
Metabolic Pathway Database
KEGG
(Kyoto Encyclopedia of Genes
and Genomes)
PUMA2 (Evolutionary
Analysis of Metabolism)
Roche Applied Science
"Biochemical Pathway"
Bioinformatics Tools
EBI Biocatalog
Koonin's Book Chapter on Information Sources for Genomics
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